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1

A grammatical approach to RNA–RNA interaction prediction

Yuki Kato, Tatsuya Akutsu, Hiroyuki Seki

Journal:

Pattern Recognition

Année:

2009

Langue:

english

Fichier:

PDF, 730 KB

english, 2009

2

Prediction of RNA secondary structure with pseudoknots using integer programming

Unyanee Poolsap, Yuki Kato, Tatsuya Akutsu

Journal:

BMC Bioinformatics

Année:

2009

Langue:

english

Fichier:

PDF, 844 KB

english, 2009

3

Optimization of Class II Malocclusion Treatments Using the Forsus™ Fatigue Resistance Device and Its Post-Treatment Effect in Adult Patients: A Case Report

Badreddine, Fauze Ramez, Yamamoto Nagai, Lucia Hatsue, Cappellette, Mario, Goncalves, Raquel Mori, Akutsu Yuki, Aparecida Keiko, Cappellette Jr, Mario

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 8.12 MB

english, 2017

4

Electrically communicating three-dimensional cardiac tissue mimic fabricated by layered cultured cardiomyocyte sheets

Tatsuya Shimizu, Masayuki Yamato, Takumitsu Akutsu, Takahiko Shibata, Yuki Isoi, Akihiko Kikuchi, Mitsuo Umezu, Teruo Okano

Journal:

Journal of Biomedical Materials Research Part B: Applied Biomaterials

Année:

2002

Langue:

english

Fichier:

PDF, 219 KB

english, 2002

5

Isolation of a bacterium that degrades urethane compounds and characterization of its urethane hydrolase

Yukie Akutsu-Shigeno, Yusuke Adachi, Chise Yamada, Kieko Toyoshima, Nobuhiko Nomura, Hiroo Uchiyama, Toshiaki Nakajima-Kambe

Journal:

Applied Microbiology and Biotechnology

Année:

2006

Langue:

english

Fichier:

PDF, 160 KB

english, 2006

6

Identification and characterization of novel poly(dl-lactic acid) depolymerases from metagenome

Daisuke Mayumi, Yukie Akutsu-Shigeno, Hiroo Uchiyama, Nobuhiko Nomura, Toshiaki Nakajima-Kambe

Journal:

Applied Microbiology and Biotechnology

Année:

2008

Langue:

english

Fichier:

PDF, 175 KB

english, 2008

7

Properties of a bacterium which degrades solid poly(tetramethylene succinate)-co-adipate, a biodegradable plastic

Hiromi Uchida, Toshiaki Nakajima-Kambe, Yukie Shigeno-Akutsu, Nobuhiko Nomura, Yutaka Tokiwa, Tadaatsu Nakahara

Journal:

FEMS Microbiology Letters

Année:

2000

Langue:

english

Fichier:

PDF, 187 KB

english, 2000

8

Quantitative analysis of the synthesis and secretion of type VII collagen in cultured human dermal fibroblasts with a sensitive sandwich enzyme-linked immunoassay

Satoshi Amano, Yuki Ogura, Nobuko Akutsu, Toshio Nishiyama

Journal:

Experimental Dermatology

Année:

2007

Langue:

english

Fichier:

PDF, 531 KB

english, 2007

9

RGMa modulates T cell responses and is involved in autoimmune encephalomyelitis

Muramatsu, Rieko, Kubo, Takekazu, Mori, Masahiro, Nakamura, Yuka, Fujita, Yuki, Akutsu, Tsugio, Okuno, Tatsusada, Taniguchi, Junko, Kumanogoh, Atsushi, Yoshida, Mari

Journal:

Nature Medicine

Année:

2011

Langue:

english

Fichier:

PDF, 1.34 MB

english, 2011

10

Rapid monomerization of poly(butylene succinate)-co-(butylene adipate) by Leptothrix sp.

Toshiaki Nakajima-Kambe, Kieko Toyoshima, Chika Saito, Hitoshi Takaguchi, Yukie Akutsu-Shigeno, Megumi Sato, Kazuyuki Miyama, Nobuhiko Nomura, Hiroo Uchiyama

Journal:

Journal of Bioscience and Bioengineering

Année:

2009

Langue:

english

Fichier:

PDF, 208 KB

english, 2009

11

Determination of the polyester polyurethane breakdown products and distribution of the polyurethane degrading enzyme of Comamonas acidovorans strain TB-35

Toshiaki Nakajima-Kambe, Fumiko Onuma, Yukie Akutsu, Tadaatsu Nakahara

Journal:

Journal of Fermentation and Bioengineering

Année:

1997

Langue:

english

Fichier:

PDF, 597 KB

english, 1997

12

Cloning and sequence analysis of a polyurethane esterase of Comamonas acidovorans TB-35

Nobuhiko Nomura, Yukie Shigeno-Akutsu, Toshiaki Nakajima-Kambe, Tadaatsu Nakahara

Journal:

Journal of Fermentation and Bioengineering

Année:

1998

Langue:

english

Fichier:

PDF, 948 KB

english, 1998

13

Purification and properties of culture-broth-secreted esterase from the polyurethane degrader Comamonas acidovorans TB-35

Yukie Shigeno-Akutsu, Toshiaki Nakajima-Kambe, Nobuhiko Nomura, Tadaatsu Nakahara

Journal:

Journal of Bioscience and Bioengineering

Année:

1999

Langue:

english

Fichier:

PDF, 569 KB

english, 1999

14

Cloning and sequence analysis of poly(tetramethylene succinate) depolymerase from Acidovorax delafieldii strain BS-3

Hiromi Uchida, Yukie Shigeno-Akutsu, Nobuhiko Nomura, Tadaatsu Nakahara, Toshiaki Nakajima-Kambe

Journal:

Journal of Bioscience and Bioengineering

Année:

2002

Langue:

english

Fichier:

PDF, 422 KB

english, 2002

15

Matrix metalloproteinase-2 inhibition and Zn2+-chelating activities of pyoverdine-type siderophores

Yukiko Shinozaki-Tajiri, Yukie Akutsu-Shigeno, Toshiaki Nakajima-Kambe, Shinji Inomata, Nobuhiko Nomura, Hiroo Uchiyama

Journal:

Journal of Bioscience and Bioengineering

Année:

2004

Langue:

english

Fichier:

PDF, 225 KB

english, 2004

16

Screening of novel cellulose-degrading bacterium and its application to denitrification of groundwater

Toshiaki Nakajima-kambe, Norihisa Okada, Mie Takeda, Yukie Akutsu-shigeno, Masatoshi Matsumura, Nobuhiko Nomura, Hiroo Uchiyama

Journal:

Journal of Bioscience and Bioengineering

Année:

2005

Langue:

english

Fichier:

PDF, 273 KB

english, 2005

17

Comparative quantitative analysis of 14 types of human papillomavirus by real-time polymerase chain reaction monitoring Invader reaction (Q-Invader assay)

Kenichi Tadokoro, Yuki Akutsu, Kazuya Tanaka, Tsuyoshi Saito, Toshikazu Yamaguchi, Toru Egashira, Isamu Ishiwata, Takashi Hara

Journal:

Diagnostic Microbiology and Infectious Disease

Année:

2010

Langue:

english

Fichier:

PDF, 429 KB

english, 2010

18

Fluoxetine promotes gliogenesis during neural differentiation in mouse ES cells

Shinji Kusakawa, Yuki Miyamoto, Atsushi Sanbe, Kazuaki Nakamura, Tomohiro Torii, Akito Tanoue, Hidenori Akutsu, Akihiro Umezawa, Junji Yamauchi

Journal:

Neuroscience Research

Année:

2010

Langue:

english

Fichier:

PDF, 54 KB

english, 2010

19

Expression in periplasmic space of Shewanella oneidensis

Yuki Takayama, Hideo Akutsu

Journal:

Protein Expression and Purification

Année:

2007

Langue:

english

Fichier:

PDF, 260 KB

english, 2007

20

Redox-coupled Conformational Alternations in Cytochrome c3 from D. vulgaris Miyazaki F on the Basis of its Reduced Solution Structure

Erisa Harada, Yuki Fukuoka, Tomoaki Ohmura, Arima Fukunishi, Gota Kawai, Toshimichi Fujiwara, Hideo Akutsu

Journal:

Journal of Molecular Biology

Année:

2002

Langue:

english

Fichier:

PDF, 594 KB

english, 2002

21

Properties of a bacterium which degrades solid poly(tetramethylene succinate)-co-adipate, a biodegradable plastic

Hiromi Uchida, Toshiaki Nakajima-Kambe, Yukie Shigeno-Akutsu, Nobuhiko Nomura, Yutaka Tokiwa, Tadaatsu Nakahara

Journal:

FEMS Microbiology Letters

Année:

2000

Langue:

english

Fichier:

PDF, 189 KB

english, 2000

22

Role of the Aromatic Ring of Tyr43 in Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F

Ozawa, Kiyoshi, Takayama, Yuki, Yasukawa, Fumiko, Ohmura, Tomoaki, Cusanovich, Michael A., Tomimoto, Yusuke, Ogata, Hideaki, Higuchi, Yoshiki, Akutsu, Hideo

Journal:

Biophysical Journal

Année:

2003

Langue:

english

Fichier:

PDF, 234 KB

english, 2003

23

Phospholipid-Dependent Regulation of Cytochrome c3-Mediated Electron Transport across Membranes

Kim, Suhk-mann, Yamamoto, Toshinori, Todokoro, Yasuto, Takayama, Yuki, Fujiwara, Toshimichi, Park, Jang-Su, Akutsu, Hideo

Journal:

Biophysical Journal

Année:

2006

Langue:

english

Fichier:

PDF, 213 KB

english, 2006

24

Dynamic Programming Algorithms and Grammatical Modeling for Protein Beta-Sheet Prediction

Kato, Yuki, Akutsu, Tatsuya, Seki, Hiroyuki

Journal:

Journal of Computational Biology

Année:

2009

Langue:

english

Fichier:

PDF, 699 KB

english, 2009

25

USING BINDING PROFILES TO PREDICT BINDING SITES OF TARGET RNAs

POOLSAP, UNYANEE, KATO, YUKI, SATO, KENGO, AKUTSU, TATSUYA

Journal:

Journal of Bioinformatics and Computational Biology

Année:

2011

Langue:

english

Fichier:

PDF, 530 KB

english, 2011

26

Redox Interaction of Cytochrome c 3 with [NiFe] Hydrogenase from Desulfovibrio vulgaris Miyazaki F †

Yahata, Naoki, Saitoh, Takashi, Takayama, Yuki, Ozawa, Kiyoshi, Ogata, Hideaki, Higuchi, Yoshiki, Akutsu, Hideo

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 796 KB

english, 2006

27

Roles of Noncoordinated Aromatic Residues in Redox Regulation of Cytochrome c 3 from Desulfovibrio vulgaris Miyazaki F †

Takayama, Yuki, Harada, Erisa, Kobayashi, Rie, Ozawa, Kiyoshi, Akutsu, Hideo

Journal:

Année:

2004

Langue:

english

Fichier:

PDF, 240 KB

english, 2004

28

Branch-and-Bound Algorithms for Enumerating Treelike Chemical Graphs with Given Path Frequency Using Detachment-Cut

Ishida, Yusuke, Kato, Yuki, Zhao, Liang, Nagamochi, Hiroshi, Akutsu, Tatsuya

Journal:

Journal of Chemical Information and Modeling

Année:

2010

Langue:

english

Fichier:

PDF, 1.85 MB

english, 2010

29

Specific Binding of CO to Tetraheme Cytochrome c 3†

Takayama, Yuki, Kobayashi, Yukiko, Yahata, Naoki, Saitoh, Takashi, Hori, Hiroshi, Ikegami, Takahisa, Akutsu, Hideo

Journal:

Année:

2006

Langue:

english

Fichier:

PDF, 183 KB

english, 2006

30

Functional Roles of the Heme Architecture and Its Environment in Tetraheme Cytochrome c

Akutsu, Hideo, Takayama, Yuki

Journal:

Accounts of Chemical Research

Année:

2007

Langue:

english

Fichier:

PDF, 667 KB

english, 2007

31

Strategic Roles of Axial Histidines in Structure Formation and Redox Regulation of Tetraheme Cytochrome c 3†

Takayama, Yuki, Werbeck, Nicolas D., Komori, Hirofumi, Morita, Kumiko, Ozawa, Kiyoshi, Higuchi, Yoshiki, Akutsu, Hideo

Journal:

Année:

2008

Langue:

english

Fichier:

PDF, 1.97 MB

english, 2008

32

Gene Structures and Catalytic Mechanisms of Microbial Enzymes Able to Blodegrade the Synthetic Solid Polymers Nylon and Polyester Polyurethaoe

Nomura, Nobuhiko, Deguchi, Tetsuya, Shigeno-Akutsu, Yukie, Nakajima-Kambe, Toshiaki, Nakahara, Tadaatsu

Journal:

Biotechnology and Genetic Engineering Reviews

Année:

2001

Langue:

english

Fichier:

PDF, 1.42 MB

english, 2001

33

Repeated folding stress-induced morphological changes in the dermal equivalent

Arai, Koji Y., Sugimoto, Mami, Ito, Kanako, Ogura, Yuki, Akutsu, Nobuko, Amano, Satoshi, Adachi, Eijiro, Nishiyama, Toshio

Journal:

Skin Research and Technology

Année:

2014

Langue:

english

Fichier:

PDF, 522 KB

english, 2014

34

SMALL VIBRATION CRYOCOOLER SYSTEM FOR CRYOGENIC GRAVITATIONAL WAVE INTERFEROMETER

TOMARU, TAKAYUKI, SUZUKI, TOSHIKAZU, HARUYAMA, TOMIYOSHI, SHINTOMI, TAKAKAZU, SATO, NOBUAKI, YAMAMOTO, AKIRA, IKUSHIMA, YUKI, LI, RUI, UCHIYAMA, TAKASHI, AKUTSU, TOMOMI, MIYOKI, SHINJI

Journal:

International Journal of Modern Physics A

Année:

2005

Langue:

english

Fichier:

PDF, 201 KB

english, 2005

35

Refolding of Mis-folded Recombinant Cytochrome c 3 with Strong Cation Exchange Chromatography

Shen, Yehua, Takayama, Yuki, Wei, Yinmao, Harada, Erisa, Nakatani, Eiichi, Akutsu, Hideo

Journal:

Journal of Liquid Chromatography & Related Technologies

Année:

2007

Langue:

english

Fichier:

PDF, 113 KB

english, 2007

36

[AIP COMPUTATIONAL MODELS FOR LIFE SCIENCES/CMLS '07 - ()] AIP Conference Proceedings - A Grammatical Approach to RNA-RNA Interaction Prediction

Kato, Yuki, Akutsu, Tatsuya, Seki, Hiroyuki, Pham, Tuan D., Zhou, Xiaobo

Année:

2007

Langue:

english

Fichier:

PDF, 684 KB

english, 2007

37

Investigation of substitution effect on fluorescence properties of Zn2+-selective ratiometric fluorescent compounds: 2-(2′-Hydroxyphenyl)benzimidazole derivatives

Akutsu, Kazuhiro, Mori, Seiji, Shinmei, Kenichi, Iwase, Hiroki, Nakano, Yoshiharu, Fujii, Yuki

Journal:

Année:

2015

Langue:

english

Fichier:

PDF, 2.56 MB

english, 2015

38

Thermal anomaly around the superconductive transition of κ-(BEDT-TTF)2Cu(NCS)2with external pressure and magnetic field control

Muraoka, Yuki, Imajo, Shusaku, Yamashita, Satoshi, Akutsu, Hiroki, Nakazawa, Yasuhiro

Journal:

Journal of Thermal Analysis and Calorimetry

Année:

2016

Langue:

english

Fichier:

PDF, 1.58 MB

english, 2016

39

Isolation and Characterization of Bacteria that Degrade Poly (Lactic Acid-Glycerol Ester)-Type Time-Release Electron Donors for Accelerated Biological Reductive Dechlorination

Jin, Hehua, Nakajima-Kambe, Toshiaki, Akutsu-Shigeno, Yukie, Nakashima, Makoto, Shigeno, Toshiya, Nomura, Nobuhiko, Uchiyama, Hiroo

Journal:

Macromolecular Symposia

Année:

2005

Fichier:

PDF, 574 KB

2005

40

Role of π-Electron Systems in Stabilization of the Oxidized Tetraheme Architecture in Cytochrome c 3

Takayama, Yuki, Taketa-Sato, Midori, Komori, Hirofumi, Morita, Kumiko, Kang, Su-Jin, Higuchi, Yoshiki, Akutsu, Hideo

Journal:

Bulletin of the Chemical Society of Japan

Année:

2011

Langue:

english

Fichier:

PDF, 977 KB

english, 2011

41

An accessibility-incorporated method for accurate prediction of RNA–RNA interactions from sequence data

Kato, Yuki, Mori, Tomoya, Sato, Kengo, Maegawa, Shingo, Hosokawa, Hiroshi, Akutsu, Tatsuya

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 3.82 MB

english, 2016

42

Comparison of Atmospheric Polycyclic Aromatic Hydrocarbons and Nitropolycyclic Aromatic Hydrocarbons in an Industrialized City (Kitakyushu) and Two Commercial Cities (Sapporo and Tokyo)

Kakimoto, Hitoshi, Matsumoto, Yutaka, Sakai, Shigekatsu, Kanoh, Fumio, Arashidani, Keiichi, Tang, Ning, Akutsu, Kazuhiko, Nakajima, Atsuko, Awata, Yukie, Toriba, Akira, Kizu, Ryoichi, Hayakawa, Kazuic

Journal:

JOURNAL OF HEALTH SCIENCE

Année:

2002

Langue:

english

Fichier:

PDF, 136 KB

english, 2002

43

An Efficient Method for Differentiation of Human Induced Pluripotent Stem Cells into Hepatocyte-like Cells Retaining Drug Metabolizing Activity

Kondo, Yuki, Iwao, Takahiro, Nakamura, Katsunori, Sasaki, Takamitsu, Takahashi, Shogo, Kamada, Noboru, Matsubara, Tsutomu, Gonzalez, Frank J., Akutsu, Hidenori, Miyagawa, Yoshitaka, Okita, Hajime, Kiy

Journal:

Drug Metabolism and Pharmacokinetics

Année:

2014

Langue:

english

Fichier:

PDF, 1.40 MB

english, 2014

44

Effects of polylactate ester-type time-release electron donor on generation and maintenance of reductive condition in river sand microcosms

JIN, Hehua, NAKAJIMA-KAMBE, Toshiaki, AKUTSU-SHIGENO, Yukie, NAKASHIMA, Makoto, SHIGENO, Toshiya, NOMURA, Nobuhiko, UCHIYAMA, Hiroo

Journal:

Journal of Groundwater Hydrology

Année:

2005

Langue:

english

Fichier:

PDF, 1.23 MB

english, 2005

45

NMR Biochemical Assay for Oxidosqualene Cyclase: Evaluation of Inhibitor Activities on Trypanosoma cruzi and Human Enzymes

Tani, Osamu, Akutsu, Yukie, Ito, Shinji, Suzuki, Takayuki, Tateishi, Yukihiro, Yamaguchi, Tomohiko, Niimi, Tatsuya, Namatame, Ichiji, Chiba, Yasunori, Sakashita, Hitoshi, Kubota, Tomomi, Yanagi, Tetsu

Journal:

Journal of Medicinal Chemistry

Année:

2018

Langue:

english

Fichier:

PDF, 866 KB

english, 2018

46

Correction to NMR Biochemical Assay for Oxidosqualene Cyclase: Evaluation of Inhibitor Activities on Trypanosoma cruzi and Human Enzymes

Tani, Osamu, Akutsu, Yukie, Ito, Shinji, Suzuki, Takayuki, Tateishi, Yukihiro, Yamaguchi, Tomohiko, Niimi, Tatsuya, Namatame, Ichiji, Chiba, Yasunori, Sakashita, Hitoshi, Kubota, Tomomi, Yanagi, Tetsu

Journal:

Journal of Medicinal Chemistry

Année:

2018

Fichier:

PDF, 180 KB

2018

47

Thermodynamic Picture of Dimer-Mott Organic Superconductors Revealed by Heat Capacity Measurements with External and Chemical Pressure Control

Nakazawa, Yasuhiro, Imajo, Shusaku, Matsumura, Yuki, Yamashita, Satoshi, Akutsu, Hiroki

Journal:

Année:

2018

Langue:

english

Fichier:

PDF, 6.00 MB

english, 2018

48

Introducing a Gene Knockout Directly Into the Amastigote Stage of Trypanosoma cruzi Using the CRISPR/Cas9 System

Akutsu, Yukie, Doi, Motomichi, Furukawa, Koji, Takagi, Yuko

Journal:

Journal of Visualized Experiments

Année:

2019

Langue:

english

Fichier:

PDF, 684 KB

english, 2019

49

A Case of Subcortical Hemorrhage in the Left Temporal Lobe Caused by Multiple Dural Arteriovenous Fistulas

Usui, Ryo, Ishima, Daisuke, Abe, Yuki, Sato, Yu, Kimura, Ayato, Kimoto, Takuma, Nagashima, Makoto, Adachi, Tomomi, Nagata, Naomi, Niki, Jun, Yamamoto, Daisuke, Akutsu, Tsugio, Nishiyama, Kazutoshi

Journal:

Journal of Stroke and Cerebrovascular Diseases

Année:

2020

Fichier:

PDF, 279 KB

2020

50

Enhanced affinity of racemic phosphorothioate DNA with transcription factor SATB1 arising from diastereomer-specific hydrogen bonds and hydrophobic contacts

Yamasaki, Kazuhiko, Akutsu, Yukie, Yamasaki, Tomoko, Miyagishi, Makoto, Kubota, Tomomi

Journal:

Nucleic Acids Research

Année:

2020

Langue:

english

Fichier:

PDF, 2.05 MB

english, 2020